Hi Khalid,
I don't see the issue you describe.
nb. I only tested using a flac file, and I am on MM version 5.1.0.2819.
A lot of bugs will have been fixed since the version that you are running.
You could sheck
these options at Tools>Options.
Are these two options checked?
If you hover the mouse cursor over each option, the tooltip will describe why these actions are optional.